pwd

'/Users/ud4/repos/GitHub/FATESFACE'

from IPython.display import Image, display
display(Image(filename='/Users/ud4/Downloads/PIDs.png',width=800))
display(Image(filename='/Users/ud4/Downloads/BiomassVsPIDs.png',width=800))
print ("Source : Knox 2023 (under review; https://d197for5662m48.cloudfront.net/documents/publicationstatus/129549/preprint_pdf/4892791c8be5504aff47afd6065937b7.pdf)")

Source : Knox 2023 (under review; https://d197for5662m48.cloudfront.net/documents/publicationstatus/129549/preprint_pdf/4892791c8be5504aff47afd6065937b7.pdf)

Index

Figure Set 1: FATES_NPP (for C-only at that site and RD/ECA) Figure Set 2: FATES_NPP Figure Set 3: FATES_STOREC Figure Set 3: FATES_STOREC_TF Figure Set 4: FATES_STOREN Figure Set 4: FATES_STOREN_TF Figure Set 5: FATES_STOREC_TF / FATES_STOREN_TF Figure Set 3: FATES_L2FR Figure Set 6: FATES_FROOTC_ALLOC / FATES_LEAFC_ALLOC Figure Set 7: FATES_FROOTC / FATES_LEAFC Figure Set 7: FATES_FROOTC Figure Set 7: FATES_LEAFC Figure Set 8: FATES_NO3UPTAKE Figure Set 8: FATES_NH4UPTAKE Figure Set 9: NET_NMIN Figure Set 9: GROSS_NMIN Figure Set10: SMIN_NO3_LEACHED Figure Set10: DENIT

Added features

• for a cell, you can choose which variables you are interested in for a single simulation.
• some plots from postprocessor

import os,glob
import xarray as xr
import matplotlib.pyplot as plt
import numpy as np
import pandas as pd
import pyreadr # to read .rds files
import datetime as dt

path_in = "/Users/ud4/FATESMDS_analysis/outputs/runs/tests_alp/230309/"

# RD only

fnames={}
fnames["DUK_PIDA_Conly_AgBgW"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0615_Base_PIDA_AgBgW_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0615_Base_PIDA_AgBgW_US-DUK_trans.nc"
fnames["ORN_PIDA_Conly_AgBgW"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0615_Base_PIDA_AgBgW_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0615_Base_PIDA_AgBgW_US-ORN_trans.nc"

fnames["DUK_PIDB_Conly"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDB_AgBgW_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDB_AgBgW_US-DUK_trans.nc"
fnames["ORN_PIDB_Conly"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDB_AgBgW_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDB_AgBgW_US-ORN_trans.nc"

fnames["DUK_PIDC_Conly"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDC_AgBgW_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDC_AgBgW_US-DUK_trans.nc"
fnames["ORN_PIDC_Conly"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDC_AgBgW_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDC_AgBgW_US-ORN_trans.nc"

fnames["DUK_PIDD_Conly"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDD_AgBgW_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDD_AgBgW_US-DUK_trans.nc"
fnames["ORN_PIDD_Conly"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDD_AgBgW_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDD_AgBgW_US-ORN_trans.nc"


fnames["DUK_PIDA_RD_AgBgW"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0615_Base_PIDA_AgBgW_RD_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0615_Base_PIDA_AgBgW_RD_US-DUK_trans.nc"
fnames["ORN_PIDA_RD_AgBgW"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0615_Base_PIDA_AgBgW_RD_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0615_Base_PIDA_AgBgW_RD_US-ORN_trans.nc"

fnames["DUK_PIDB_RD_AgBgW"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDB_AgBgW_RD_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDB_AgBgW_RD_US-DUK_trans.nc"
fnames["ORN_PIDB_RD_AgBgW"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDB_AgBgW_RD_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDB_AgBgW_RD_US-ORN_trans.nc"

#"ORN_PIDC_RD" : Simulation missing *Running
fnames["DUK_PIDC_RD_AgBgW"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDC_AgBgW_RD_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDC_AgBgW_RD_US-DUK_trans.nc"
fnames["ORN_PIDC_RD_AgBgW"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDC_AgBgW_RD_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDC_AgBgW_RD_US-DUK_trans.nc"

fnames["DUK_PIDD_RD_AgBgW"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDD_AgBgW_RD_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDD_AgBgW_RD_US-DUK_trans.nc"
fnames["ORN_PIDD_RD_AgBgW"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDD_AgBgW_RD_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r0614_Base_PIDD_AgBgW_RD_US-ORN_trans.nc"

#fnames["DUK_PIDzero_RD"] = : Simulation missing *Running
#fnames["ORN_PIDzero_RD"] = f"{path_in}Bharat_AW_Nalloc_api25e3sm_mf0df100_r06122_Base_PIDzero_RD_processed/Bharat_AW_Nalloc_api25e3sm_mf0df100_r06122_Base_PIDzero_RD_US-ORN_trans.nc"

# Other global attributes for plots

logging_year= 1855

ds = {}

for idx, key in enumerate(fnames.keys()):
    print (key)
    ds[key] = xr.open_mfdataset(fnames[key],decode_times=True)
for idx, key in enumerate(ds.keys()):
    ds[key]['time'] =  pd.to_datetime(ds[key].time.values.astype(str))

DUK_PIDA_Conly_AgBgW
ORN_PIDA_Conly_AgBgW
DUK_PIDB_Conly
ORN_PIDB_Conly
DUK_PIDC_Conly
ORN_PIDC_Conly
DUK_PIDD_Conly
ORN_PIDD_Conly
DUK_PIDA_RD_AgBgW
ORN_PIDA_RD_AgBgW
DUK_PIDB_RD_AgBgW
ORN_PIDB_RD_AgBgW
DUK_PIDC_RD_AgBgW
ORN_PIDC_RD_AgBgW
DUK_PIDD_RD_AgBgW
ORN_PIDD_RD_AgBgW

Name of the single simulation that you want to investigate:

AW: PID-D for both Duke and ORNL, and PID-B for Duke.

sims = "DUK_PIDD_RD_AgBgW"
#sims = "ORN_PIDD_RD_AgBgW"
#sims = "ORN_PIDB_RD_AgBgW"
#sims = "DUK_PIDB_RD_AgBgW"

ds[key][var].groupby("time.year").mean('time')

<xarray.DataArray 'DENIT' (year: 148, lndgrid: 1)>
dask.array<stack, shape=(148, 1), dtype=float32, chunksize=(1, 1), chunktype=numpy.ndarray>
Coordinates:
  * year     (year) int64 1850 1851 1852 1853 1854 ... 1993 1994 1995 1996 1997
Dimensions without coordinates: lndgrid

print ("\nAll Plots >>>>>>")

idx_logging_date = 5*365 # Jan 1, 1855

# For multiple variables on a same plot upto 5 years after logging 
Yrs_Next = 5 # upto 5 years after logging 

fig, axs = plt.subplots(9,1 , figsize=(15,30), dpi=400)

# Subplot 1 >>>
idx_ax = 0
var = "FATES_NPP"
# C-only
sim_conly = f"{sims.split('_')[0]}_PIDA_Conly_{sims.split('_')[-1]}"
key=sim_conly
ts_data = ds[key][var][idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
axs[idx_ax].plot(ts_data.time, ts_data, label = var + " C-only")
# RD
key=sims
ts_data = ds[key][var][idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
axs[idx_ax].plot(ts_data.time, ts_data, label = var )
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
axs[idx_ax].set_title(f"{key} Daily Logging + 5 years\n",fontsize=16)
axs[idx_ax].axhline(y = 0, color = 'r',lw=1, alpha=.1)

print(key)
# Subplot 1 <<<

# Subplot 2 >>>
idx_ax = 1
vars_plot = (
"""
FATES_STOREC_TF
FATES_STOREC
"""
).split('\n')
vars_plot = vars_plot[1:-1]
var = vars_plot[0]
ts_data = ds[key][var][idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
axs[idx_ax].plot(ts_data.time, ts_data, label = var)
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
ax_tmp = axs[idx_ax].twinx()
var = vars_plot[1]
ts_data = ds[key][var][idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
ax_tmp.plot(ts_data.time,ts_data,'k.',  label = var, alpha=.3)
ax_tmp.legend(loc = 5)
ax_tmp.set_ylabel (f"{var}({ds[key][var].units})")
ax_tmp.axhline(y = 0, color = 'r',lw=1, alpha=.1)
# Subplot 2 <<<

# Subplot 3 >>>
idx_ax = 2
vars_plot = (
"""
FATES_STOREN_TF
FATES_STOREN
"""
).split('\n')
vars_plot = vars_plot[1:-1]
var = vars_plot[0]
ts_data = ds[key][var][idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
axs[idx_ax].plot(ts_data.time, ts_data, label = var)
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
ax_tmp = axs[idx_ax].twinx()
var = vars_plot[1]
ts_data = ds[key][var][idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
ax_tmp.plot(ts_data.time,ts_data,'k.',  label = var, alpha=.3)
ax_tmp.set_ylabel (f"{var}({ds[key][var].units})")
ax_tmp.legend(loc = 5)
ax_tmp.axhline(y = 0, color = 'r',lw=1, alpha=.1)

# Subplot 3 <<<
# Subplot 4 >>>
idx_ax = 3
ts_data = (ds[key]["FATES_STOREC_TF"]/ds[key]["FATES_STOREN_TF"])[idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
axs[idx_ax].plot(ts_data.time, ts_data, label = "FATES_STOREC_TF/FATES_STOREN_TF")
ax_tmp = axs[idx_ax].twinx()
ts_data = (ds[key]["FATES_STOREC"]/ds[key]["FATES_STOREN"])[idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
ax_tmp.plot(ts_data.time, ts_data, 'k.', label = "FATES_STOREC/FATES_STOREN")
ax_tmp.legend(loc = 5)
ax_tmp.set_ylabel (f"{var}({ds[key][var].units})")
# Subplot 4 <<<


# Subplot 5 >>>
idx_ax = 4
ts_data = (ds[key]["FATES_FROOT_ALLOC"]/ds[key]["FATES_LEAF_ALLOC"])[idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
axs[idx_ax].plot(ts_data.time, ts_data, label = "FATES_FROOT_ALLOC/FATES_LEAF_ALLOC")
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
ax_tmp = axs[idx_ax].twinx()
ts_data = ds[key]["FATES_L2FR"][idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
ax_tmp.plot(ts_data.time, ts_data, 'k.', label = "FATES_L2FR")
ax_tmp.set_ylabel (f"{ds[key]['FATES_L2FR'].units}")
ax_tmp.legend(loc = 5)
# Subplot 5 <<<

# Subplot 6 >>>
idx_ax = 5
vars_plot = (
"""
FATES_LEAFC
FATES_FROOTC
"""
).split('\n')
vars_plot = vars_plot[1:-1]
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var][idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
    axs[idx_ax].plot(ts_data.time, ts_data, label = var)
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
ax_tmp = axs[idx_ax].twinx()
ts_data = (ds[key]["FATES_FROOTC"]/ds[key]["FATES_LEAFC"])[idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
ax_tmp.plot(ts_data.time, ts_data, 'k.', label = "FATES_FROOTC/FATES_LEAFC")
ax_tmp.legend(loc = 5)
ax_tmp.set_ylabel (f"Unitless")

# Subplot 6 <<<

# Subplot 7 >>>
idx_ax = 6
vars_plot = (
"""
FATES_NO3UPTAKE
FATES_NH4UPTAKE
"""
).split('\n')
vars_plot = vars_plot[1:-1]
var = vars_plot[0]
ts_data = ds[key][var][idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
axs[idx_ax].plot(ts_data.time, ts_data, label = var)
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
axs[idx_ax].axhline(y = 0, color = 'r',lw=1, alpha=.1)
ax_tmp = axs[idx_ax].twinx()
var = vars_plot[1]
ts_data = ds[key][var][idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
ax_tmp.plot(ts_data.time,ts_data,'k.',  label = var)
ax_tmp.legend(loc = 5)
# Subplot 7 <<<

# Subplot 8 >>>
idx_ax = 7
vars_plot = (
"""
GROSS_NMIN
NET_NMIN
"""
).split('\n')
vars_plot = vars_plot[1:-1]
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var][idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
    axs[idx_ax].plot(ts_data.time, ts_data, label = var)
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
axs[idx_ax].axhline(y = 0, color = 'r',lw=1, alpha=.1)
# Subplot 8 <<<

# Subplot 9 >>>
idx_ax = 8
vars_plot = (
"""
SMIN_NO3_LEACHED
DENIT
"""
).split('\n')
vars_plot = vars_plot[1:-1]
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var][idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
    axs[idx_ax].plot(ts_data.time, ts_data, label = var)
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
axs[idx_ax].axhline(y = 0, color = 'r',lw=1, alpha=.1)
# Subplot 9 <<<
print(key)
for i in range(len(axs)): 
    axs[i].legend()
    axs[i].axvline(x = dt.date(1855,1,1), color = 'g',lw=5, alpha=.1)
fig.savefig('./Plots/' + f'{key}_daily.pdf',bbox_inches='tight')
fig.savefig('./Plots/' + f'{key}_daily.png',bbox_inches='tight')

All Plots >>>>>>
DUK_PIDD_RD_AgBgW

/Users/ud4/opt/anaconda3/envs/pyces/lib/python3.9/site-packages/dask/core.py:121: RuntimeWarning: invalid value encountered in true_divide
  return func(*(_execute_task(a, cache) for a in args))

DUK_PIDD_RD_AgBgW

print ("\nAll Plots >>>>>>")

idx_logging_date = 5*365 # Jan 1, 1855

# For multiple variables on a same plot upto 5 years after logging 
Yrs_Next = 5 # upto 5 years after logging 

fig, axs = plt.subplots(9,1 , figsize=(15,30), dpi=400)

# Subplot 1 >>>
idx_ax = 0
var = "FATES_NPP"
# C-only
sim_conly = f"{sims.split('_')[0]}_PIDA_Conly_{sims.split('_')[-1]}"
key=sim_conly
ts_data = ds[key][var][idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
axs[idx_ax].scatter(ts_data.time, ts_data, marker=".", label = var + " C-only",alpha=.2)
# RD
key=sims
ts_data = ds[key][var][idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
axs[idx_ax].scatter(ts_data.time, ts_data, marker=".", label = var ,alpha=.2)
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
axs[idx_ax].set_title(f"{key} Daily Logging + 5 years (Scatter) \n",fontsize=16)
axs[idx_ax].axhline(y = 0, color = 'r',lw=1, alpha=.1)

print(key)
# Subplot 1 <<<

# Subplot 2 >>>
idx_ax = 1
vars_plot = (
"""
FATES_STOREC_TF
FATES_STOREC
"""
).split('\n')
vars_plot = vars_plot[1:-1]
var = vars_plot[0]
ts_data = ds[key][var][idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
axs[idx_ax].scatter(ts_data.time, ts_data, marker=".", label = var,alpha=.2)
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
ax_tmp = axs[idx_ax].twinx()
var = vars_plot[1]
ts_data = ds[key][var][idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
ax_tmp.scatter(ts_data.time,ts_data,marker=".", color='k', label = var, alpha=.3)
ax_tmp.legend(loc = 5)
ax_tmp.set_ylabel (f"{var}({ds[key][var].units})")
ax_tmp.axhline(y = 0, color = 'r',lw=1, alpha=.1)
# Subplot 2 <<<

# Subplot 3 >>>
idx_ax = 2
vars_plot = (
"""
FATES_STOREN_TF
FATES_STOREN
"""
).split('\n')
vars_plot = vars_plot[1:-1]
var = vars_plot[0]
ts_data = ds[key][var][idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
axs[idx_ax].scatter(ts_data.time, ts_data, marker=".", label = var,alpha=.2)
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
ax_tmp = axs[idx_ax].twinx()
var = vars_plot[1]
ts_data = ds[key][var][idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
ax_tmp.scatter(ts_data.time,ts_data, marker=".", color='k',label = var, alpha=.3)
ax_tmp.set_ylabel (f"{var}({ds[key][var].units})")
ax_tmp.legend(loc = 5)
ax_tmp.axhline(y = 0, color = 'r',lw=1, alpha=.1)

# Subplot 3 <<<
# Subplot 4 >>>
idx_ax = 3
ts_data = (ds[key]["FATES_STOREC_TF"]/ds[key]["FATES_STOREN_TF"])[idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
axs[idx_ax].scatter(ts_data.time, ts_data, label = "FATES_STOREC_TF/FATES_STOREN_TF",alpha=.2)
ax_tmp = axs[idx_ax].twinx()
ts_data = (ds[key]["FATES_STOREC"]/ds[key]["FATES_STOREN"])[idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
ax_tmp.scatter(ts_data.time, ts_data,  marker=".", color='k', label = "FATES_STOREC/FATES_STOREN",alpha=.2)
ax_tmp.legend(loc = 5)
ax_tmp.set_ylabel (f"{var}({ds[key][var].units})")
# Subplot 4 <<<


# Subplot 5 >>>
idx_ax = 4
ts_data = (ds[key]["FATES_FROOT_ALLOC"]/ds[key]["FATES_LEAF_ALLOC"])[idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
axs[idx_ax].scatter(ts_data.time, ts_data, label = "FATES_FROOT_ALLOC/FATES_LEAF_ALLOC",alpha=.2)
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
ax_tmp = axs[idx_ax].twinx()
ts_data = ds[key]["FATES_L2FR"][idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
ax_tmp.scatter(ts_data.time, ts_data,  marker=".", color='k', label = "FATES_L2FR",alpha=.2)
ax_tmp.set_ylabel (f"{ds[key]['FATES_L2FR'].units}")
ax_tmp.legend(loc = 5)
# Subplot 5 <<<

# Subplot 6 >>>
idx_ax = 5
vars_plot = (
"""
FATES_LEAFC
FATES_FROOTC
"""
).split('\n')
vars_plot = vars_plot[1:-1]
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var][idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
    axs[idx_ax].scatter(ts_data.time, ts_data, label = var,alpha=.2)
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
ax_tmp = axs[idx_ax].twinx()
ts_data = (ds[key]["FATES_FROOTC"]/ds[key]["FATES_LEAFC"])[idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
ax_tmp.scatter(ts_data.time, ts_data,  marker=".", color='k', label = "FATES_FROOTC/FATES_LEAFC",alpha=.2)
ax_tmp.legend(loc = 5)
ax_tmp.set_ylabel (f"Unitless")

# Subplot 6 <<<

# Subplot 7 >>>
idx_ax = 6
vars_plot = (
"""
FATES_NO3UPTAKE
FATES_NH4UPTAKE
"""
).split('\n')
vars_plot = vars_plot[1:-1]
var = vars_plot[0]
ts_data = ds[key][var][idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
axs[idx_ax].scatter(ts_data.time, ts_data, label = var,alpha=.2)
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
axs[idx_ax].axhline(y = 0, color = 'r',lw=1, alpha=.1)
ax_tmp = axs[idx_ax].twinx()
var = vars_plot[1]
ts_data = ds[key][var][idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
ax_tmp.scatter(ts_data.time,ts_data, marker=".", color='k',  label = var,alpha=.2)
ax_tmp.legend(loc = 5)
# Subplot 7 <<<

# Subplot 8 >>>
idx_ax = 7
vars_plot = (
"""
GROSS_NMIN
NET_NMIN
"""
).split('\n')
vars_plot = vars_plot[1:-1]
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var][idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
    axs[idx_ax].scatter(ts_data.time, ts_data, label = var,alpha=.2)
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
axs[idx_ax].axhline(y = 0, color = 'r',lw=1, alpha=.1)
# Subplot 8 <<<

# Subplot 9 >>>
idx_ax = 8
vars_plot = (
"""
SMIN_NO3_LEACHED
DENIT
"""
).split('\n')
vars_plot = vars_plot[1:-1]
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var][idx_logging_date:idx_logging_date+Yrs_Next*365] # Daily data range from logging date to next five years
    axs[idx_ax].scatter(ts_data.time, ts_data, label = var,alpha=.2)
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
axs[idx_ax].axhline(y = 0, color = 'r',lw=1, alpha=.1)
# Subplot 9 <<<
print(key)
for i in range(len(axs)): 
    axs[i].legend()
    axs[i].axvline(x = dt.date(1855,1,1), color = 'g',lw=5, alpha=.1)
#fig.savefig('./Plots/' + f'{key}_Scatter_daily.pdf',bbox_inches='tight')
#fig.savefig('./Plots/' + f'{key}_Scatter_daily.png',bbox_inches='tight')

All Plots >>>>>>
DUK_PIDD_RD_AgBgW

/Users/ud4/opt/anaconda3/envs/pyces/lib/python3.9/site-packages/dask/core.py:121: RuntimeWarning: invalid value encountered in true_divide
  return func(*(_execute_task(a, cache) for a in args))

DUK_PIDD_RD_AgBgW

print ("\nAll Plots >>>>>>")
# For multiple variables on a same plot
fig, axs = plt.subplots(9,1 , figsize=(15,30), dpi=400)

# Subplot 1 >>>
idx_ax = 0
var = "FATES_NPP"
# C-only
sim_conly = f"{sims.split('_')[0]}_PIDA_Conly_{sims.split('_')[-1]}"
key=sim_conly
ts_data = ds[key][var].groupby("time.year").mean('time')
axs[idx_ax].plot(ts_data.year, ts_data, label = var + " C-only")
# RD
key=sims
ts_data = ds[key][var].groupby("time.year").mean('time')
axs[idx_ax].plot(ts_data.year, ts_data, label = var )
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
axs[idx_ax].set_title(f"{key} Annual Mean\n",fontsize=16)

# Subplot 1 <<<

# Subplot 2 >>>
idx_ax = 1
vars_plot = (
"""
FATES_STOREC_TF
FATES_STOREC
"""
).split('\n')
vars_plot = vars_plot[1:-1]
var = vars_plot[0]
ts_data = ds[key][var].groupby("time.year").mean('time')
axs[idx_ax].plot(ts_data.year, ts_data, label = var)
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
ax_tmp = axs[idx_ax].twinx()
var = vars_plot[1]
ts_data = ds[key][var].groupby("time.year").mean('time')
ax_tmp.plot(ts_data.year,ts_data,'k+',  label = var)
ax_tmp.legend(loc = 5)
ax_tmp.set_ylabel (f"{var}({ds[key][var].units})")
ax_tmp.axhline(y = 0, color = 'r',lw=1, alpha=.1)
# Subplot 2 <<<

# Subplot 3 >>>
idx_ax = 2
vars_plot = (
"""
FATES_STOREN_TF
FATES_STOREN
"""
).split('\n')
vars_plot = vars_plot[1:-1]
var = vars_plot[0]
ts_data = ds[key][var].groupby("time.year").mean('time')
axs[idx_ax].plot(ts_data.year, ts_data, label = var)
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
ax_tmp = axs[idx_ax].twinx()
var = vars_plot[1]
ts_data = ds[key][var].groupby("time.year").mean('time')
ax_tmp.plot(ts_data.year,ts_data,'k+',  label = var)
ax_tmp.set_ylabel (f"{var}({ds[key][var].units})")
ax_tmp.legend(loc = 5)
ax_tmp.axhline(y = 0, color = 'r',lw=1, alpha=.1)

# Subplot 3 <<<

# Subplot 4 >>>
idx_ax = 3
ts_data = (ds[key]["FATES_STOREC_TF"]/ds[key]["FATES_STOREN_TF"]).groupby("time.year").mean('time')
axs[idx_ax].plot(ts_data.year, ts_data, label = "FATES_STOREC_TF/FATES_STOREN_TF")
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
ax_tmp = axs[idx_ax].twinx()
ts_data = (ds[key]["FATES_STOREC"]/ds[key]["FATES_STOREN"]).groupby("time.year").mean('time')
ax_tmp.plot(ts_data.year, ts_data, 'k+', label = "FATES_STOREC/FATES_STOREN")
ax_tmp.legend(loc = 5)
ax_tmp.set_ylabel (f"{var}({ds[key][var].units})")
# Subplot 4 <<<

# Subplot 5 >>>
idx_ax = 4
ts_data = (ds[key]["FATES_FROOT_ALLOC"]/ds[key]["FATES_LEAF_ALLOC"]).groupby("time.year").mean('time')
axs[idx_ax].plot(ts_data.year, ts_data, label = "FATES_FROOT_ALLOC/FATES_LEAF_ALLOC")
#axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
ax_tmp = axs[idx_ax].twinx()
ts_data = ds[key]["FATES_L2FR"].groupby("time.year").mean('time')
ax_tmp.plot(ts_data.year, ts_data,'k+', label = "FATES_L2FR")
ax_tmp.set_ylabel (f"{ds[key]['FATES_L2FR'].units}")
ax_tmp.legend(loc = 5)
# Subplot 5 <<<

# Subplot 6 >>>
idx_ax = 5
vars_plot = (
"""
FATES_LEAFC
FATES_FROOTC
"""
).split('\n')
vars_plot = vars_plot[1:-1]
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    axs[idx_ax].plot(ts_data.year, ts_data, label = var)
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
ax_tmp = axs[idx_ax].twinx()
ts_data = (ds[key]["FATES_FROOTC"]/ds[key]["FATES_LEAFC"]).groupby("time.year").mean('time')
ax_tmp.plot(ts_data.year, ts_data, 'k+', label = "FATES_FROOTC/FATES_LEAFC")
ax_tmp.legend(loc = 1)
ax_tmp.set_ylabel (f"Unitless")

# Subplot 6 <<<

# Subplot 7 >>>
idx_ax = 6
vars_plot = (
"""
FATES_NO3UPTAKE
FATES_NH4UPTAKE
"""
).split('\n')
vars_plot = vars_plot[1:-1]
var = vars_plot[0]
ts_data = ds[key][var].groupby("time.year").mean('time')
axs[idx_ax].plot(ts_data.year, ts_data, label = var)
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
ax_tmp = axs[idx_ax].twinx()
var = vars_plot[1]
ts_data = ds[key][var].groupby("time.year").mean('time')
ax_tmp.plot(ts_data.year,ts_data,'k+',  label = var)
ax_tmp.legend(loc = 5)
# Subplot 7 <<<

# Subplot 8 >>>
idx_ax = 7
vars_plot = (
"""
GROSS_NMIN
NET_NMIN
"""
).split('\n')
vars_plot = vars_plot[1:-1]
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    axs[idx_ax].plot(ts_data.year, ts_data, label = var)
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
# Subplot 8 <<<

# Subplot 9 >>>
idx_ax = 8
vars_plot = (
"""
SMIN_NO3_LEACHED
DENIT
"""
).split('\n')
vars_plot = vars_plot[1:-1]
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    axs[idx_ax].plot(ts_data.year, ts_data, label = var)
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
# Subplot 9 <<<


for i in range(len(axs)): 
    axs[i].legend()
    axs[i].axvline(x = logging_year, color = 'r',lw=5, alpha=.2)
    
fig.savefig('./Plots/' + f'{key}.pdf',bbox_inches='tight')
fig.savefig('./Plots/' + f'{key}.png',bbox_inches='tight')

All Plots >>>>>>

/Users/ud4/opt/anaconda3/envs/pyces/lib/python3.9/site-packages/dask/core.py:121: RuntimeWarning: invalid value encountered in true_divide
  return func(*(_execute_task(a, cache) for a in args))

print(breakit)

---------------------------------------------------------------------------
NameError                                 Traceback (most recent call last)
/var/folders/f1/01gxw8vn74q_x_rf_p5ztryjr405zq/T/ipykernel_9767/4259712761.py in <module>
----> 1 print(breakit)

NameError: name 'breakit' is not defined

The next cell is for the carbon only simuations for the chosen site

Figure Set 1

print ("\nFigure Set 1 >>>>>>")
# For multiple variables on a same plot

sim_conly = f"{sims.split('_')[0]}_PIDA_Conly_{sims.split('_')[-1]}"

key=sim_conly
#key=sims
vars_plot = (
"""
FATES_GPP
FATES_AUTORESP
FATES_NPP
"""
).split('\n')
vars_plot = vars_plot[1:-1]



ymin = 9e20
ymax = -9e20
sum_ts = 0
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    sum_ts= sum_ts + ts_data
    ts_data.plot(figsize=(20,3))
    if np.min(ts_data.values) < ymin:
        ymin = np.min(ts_data.values)
    if np.max(ts_data.values) > ymax:
        ymax = np.max(ts_data.values)
    
    plt.title(f"{ds[key][var].long_name} ({var}) - {key} - AnnualSUM | Units: {ds[key][var].units}")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.axvline(x = 1996, color = 'g',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(.2e-6,1.5e-6)
    if i_var != len(vars_plot)-1 : 
        plt.xticks([])
        plt.xlabel(None)
        
fig = plt.figure(figsize=(20,9))
plt.title (f"Common Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = var)
    plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
#plt.close(fig)
    
fig1 = plt.figure(figsize=(20,9))
plt.title (f"Fractional Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data/sum_ts, label = var)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
#plt.close(fig1)
#plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)

ts_data.year

Rest of the results are for the chosen sim!

Figure Set 2

print ("\nFigure Set 2 >>>>>>")

# For multiple variables on a same plot

#sims = "ORN_PIDA_RD_AgBgW" # Difined at the top
key=sims

vars_plot = (
"""
FATES_GPP
FATES_AUTORESP
FATES_NPP
"""
).split('\n')
vars_plot = vars_plot[1:-1]



ymin = 9e20
ymax = -9e20
sum_ts = 0
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    sum_ts= sum_ts + ts_data
    ts_data.plot(figsize=(20,3))
    if np.min(ts_data.values) < ymin:
        ymin = np.min(ts_data.values)
    if np.max(ts_data.values) > ymax:
        ymax = np.max(ts_data.values)
    
    plt.title(f"{ds[key][var].long_name} ({var}) - {key} - AnnualSUM | Units: {ds[key][var].units}")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.axvline(x = 1996, color = 'g',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(.2e-6,1.5e-6)
    if i_var != len(vars_plot)-1 : 
        plt.xticks([])
        plt.xlabel(None)
        
fig = plt.figure(figsize=(20,9))
plt.title (f"Common Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = var)
    plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)

    
fig1 = plt.figure(figsize=(20,9))
plt.title (f"Fractional Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data/sum_ts, label = var)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
        

Figure Set 3

print ("\nFigure Set 3 >>>>>>")
# For multiple variables on a same plot

#sims = "ORN_PIDA_RD_AgBgW" # Difined at the top
key=sims

vars_plot = (
"""
FATES_STOREC
FATES_STOREC_TF
"""
).split('\n')
vars_plot = vars_plot[1:-1]



ymin = 9e20
ymax = -9e20
sum_ts = 0
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    sum_ts= sum_ts + ts_data
    ts_data.plot(figsize=(20,3))
    if np.min(ts_data.values) < ymin:
        ymin = np.min(ts_data.values)
    if np.max(ts_data.values) > ymax:
        ymax = np.max(ts_data.values)
    
    plt.title(f"{ds[key][var].long_name} ({var}) - {key} - AnnualSUM | Units: {ds[key][var].units}")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.axvline(x = 1996, color = 'g',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(.2e-6,1.5e-6)
    if i_var != len(vars_plot)-1 : 
        plt.xticks([])
        plt.xlabel(None)
        
fig = plt.figure(figsize=(20,9))
plt.title (f"Common Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    if var == "FATES_L2FR" : continue
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = var)
    plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
fig1 = plt.figure(figsize=(20,9))
plt.title (f"Fractional Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data/sum_ts, label = var)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
fig2 = plt.figure(figsize=(20,9))
plt.title (f"Ratio Plot for simulation {key}", fontsize=15)
#for i_var,var in enumerate(vars_plot):
if True:
    ts_data = (ds[key]["FATES_STOREC"]/ds[key]["FATES_STOREC_TF"]).groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = "FATES_STOREC/FATES_STOREC_TF")
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
    plt.title(f"{key}: FATES_STOREC/FATES_STOREC_TF")
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
        

Figure Set 4

print ("\nFigure Set 4 >>>>>>")
# For multiple variables on a same plot

#sims = "ORN_PIDA_RD_AgBgW" # Difined at the top
key=sims

vars_plot = (
"""
FATES_STOREN
FATES_STOREN_TF
"""
).split('\n')
vars_plot = vars_plot[1:-1]



ymin = 9e20
ymax = -9e20
sum_ts = 0
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    sum_ts= sum_ts + ts_data
    ts_data.plot(figsize=(20,3))
    if np.min(ts_data.values) < ymin:
        ymin = np.min(ts_data.values)
    if np.max(ts_data.values) > ymax:
        ymax = np.max(ts_data.values)
    
    plt.title(f"{ds[key][var].long_name} ({var}) - {key} - AnnualSUM | Units: {ds[key][var].units}")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.axvline(x = 1996, color = 'g',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(.2e-6,1.5e-6)
    if i_var != len(vars_plot)-1 : 
        plt.xticks([])
        plt.xlabel(None)
        
fig = plt.figure(figsize=(20,9))
plt.title (f"Common Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    if var == "FATES_L2FR" : continue
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = var)
    plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
fig1 = plt.figure(figsize=(20,9))
plt.title (f"Fractional Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data/sum_ts, label = var)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
fig2 = plt.figure(figsize=(20,9))
plt.title (f"Ratio Plot for simulation {key}", fontsize=15)
#for i_var,var in enumerate(vars_plot):
if True:
    ts_data = (ds[key]["FATES_STOREN"]/ds[key]["FATES_STOREN_TF"]).groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = "FATES_STOREN/FATES_STOREN_TF")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
    plt.title(f"{key}: FATES_STOREN/FATES_STOREN_TF")
    
        

Figure Set 5

print ("\nFigure Set 5 >>>>>>")
# For multiple variables on a same plot

#sims = "ORN_PIDA_RD_AgBgW" # Difined at the top
key=sims

vars_plot = (
"""
FATES_STOREC_TF
FATES_STOREN_TF
"""
).split('\n')
vars_plot = vars_plot[1:-1]



ymin = 9e20
ymax = -9e20
sum_ts = 0
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    sum_ts= sum_ts + ts_data
    ts_data.plot(figsize=(20,3))
    if np.min(ts_data.values) < ymin:
        ymin = np.min(ts_data.values)
    if np.max(ts_data.values) > ymax:
        ymax = np.max(ts_data.values)
    
    plt.title(f"{ds[key][var].long_name} ({var}) - {key} - AnnualSUM | Units: {ds[key][var].units}")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.axvline(x = 1996, color = 'g',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(.2e-6,1.5e-6)
    if i_var != len(vars_plot)-1 : 
        plt.xticks([])
        plt.xlabel(None)
        
fig = plt.figure(figsize=(20,9))
plt.title (f"Common Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    if var == "FATES_L2FR" : continue
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = var)
    plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
fig1 = plt.figure(figsize=(20,9))
plt.title (f"Fractional Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data/sum_ts, label = var)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
fig2 = plt.figure(figsize=(20,9))
plt.title (f"Ratio Plot for simulation {key}", fontsize=15)
#for i_var,var in enumerate(vars_plot):
if True:
    ts_data = (ds[key]["FATES_STOREC_TF"]/ds[key]["FATES_STOREN_TF"]).groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = "FATES_STOREC_TF/FATES_STOREN_TF")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
    plt.title(f"{key}: FATES_STOREC_TF/FATES_STOREN_TF")
    
fig3 = plt.figure(figsize=(20,9))
plt.title (f"Ratio Plot for simulation {key}", fontsize=15)
#for i_var,var in enumerate(vars_plot):
if True:
    ts_data = (ds[key]["FATES_STOREC"]/ds[key]["FATES_STOREN"]).groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = "FATES_STOREC/FATES_STOREN")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
    plt.title(f"{key}: FATES_STOREC/FATES_STOREN")
    
        

Figure Set 6

print ("\nFigure Set 6 >>>>>>")
# For multiple variables on a same plot

#sims = "ORN_PIDA_RD_AgBgW" # Difined at the top
key=sims

'''
vars_plot = [
"FATES_CROOT_ALLOC",
"FATES_FROOT_ALLOC",
"FATES_FROOT_ALLOC",
"FATES_SEED_ALLOC",
"FATES_STEM_ALLOC",
"FATES_STORE_ALLOC"
]

'''

vars_plot = (
"""
FATES_CROOT_ALLOC
FATES_FROOT_ALLOC
FATES_FROOT_ALLOC
FATES_SEED_ALLOC
FATES_STEM_ALLOC
FATES_STORE_ALLOC
"""
).split('\n')
vars_plot = vars_plot[1:-1]



ymin = 9e20
ymax = -9e20
sum_ts = 0
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    sum_ts= sum_ts + ts_data
    ts_data.plot(figsize=(20,3))
    if np.min(ts_data.values) < ymin:
        ymin = np.min(ts_data.values)
    if np.max(ts_data.values) > ymax:
        ymax = np.max(ts_data.values)
    
    plt.title(f"{ds[key][var].long_name} ({var}) - {key} - AnnualSUM | Units: {ds[key][var].units}")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.axvline(x = 1996, color = 'g',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(.2e-6,1.5e-6)
    if i_var != len(vars_plot)-1 : 
        plt.xticks([])
        plt.xlabel(None)
        
fig = plt.figure(figsize=(20,9))
plt.title (f"Common Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = var)
    plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
fig1 = plt.figure(figsize=(20,9))
plt.title (f"Fractional Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data/sum_ts, label = var)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)


fig2 = plt.figure(figsize=(20,9))
plt.title (f"Ratio Plot for simulation {key}", fontsize=15)
#for i_var,var in enumerate(vars_plot):
if True:
    ts_data = (ds[key]["FATES_FROOT_ALLOC"]/ds[key]["FATES_LEAF_ALLOC"]).groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = "FATES_FROOT_ALLOC/FATES_LEAF_ALLOC")
    ts_data = ds[key]["FATES_L2FR"].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = "FATES_L2FR")
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
    plt.title(f"{key}: FATES_FROOT_ALLOC/FATES_LEAF_ALLOC")
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
   

Figure Set 7

print ("\nFigure Set 7 >>>>>>")

# For multiple variables on a same plot

#sims = "ORN_PIDA_RD_AgBgW" # Difined at the top
key=sims

vars_plot = (
"""
FATES_LEAFC
FATES_FROOTC
"""
).split('\n')
vars_plot = vars_plot[1:-1]



ymin = 9e20
ymax = -9e20
sum_ts = 0
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    sum_ts= sum_ts + ts_data
    ts_data.plot(figsize=(20,3))
    if np.min(ts_data.values) < ymin:
        ymin = np.min(ts_data.values)
    if np.max(ts_data.values) > ymax:
        ymax = np.max(ts_data.values)
    
    plt.title(f"{ds[key][var].long_name} ({var}) - {key} - AnnualSUM | Units: {ds[key][var].units}")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.axvline(x = 1996, color = 'g',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(.2e-6,1.5e-6)
    if i_var != len(vars_plot)-1 : 
        plt.xticks([])
        plt.xlabel(None)
        
fig = plt.figure(figsize=(20,9))
plt.title (f"Common Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    if var == "FATES_L2FR" : continue
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = var)
    plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
fig1 = plt.figure(figsize=(20,9))
plt.title (f"Fractional Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data/sum_ts, label = var)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
fig2 = plt.figure(figsize=(20,9))
plt.title (f"Ratio Plot for simulation {key}", fontsize=15)
#for i_var,var in enumerate(vars_plot):
if True:
    ts_data = (ds[key]["FATES_FROOTC"]/ds[key]["FATES_LEAFC"]).groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = "FATES_FROOTC/FATES_LEAFC")
    ts_data = ds[key]["FATES_L2FR"].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = "FATES_L2FR")
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
    plt.title(f"{key}: FATES_FROOTC/FATES_LEAFC")
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
        

Figure Set 8

print ("\nFigure Set 8 >>>>>>")

# For multiple variables on a same plot

#sims = "ORN_PIDA_RD_AgBgW" # Difined at the top
key=sims

vars_plot = (
"""
FATES_NO3UPTAKE
FATES_NH4UPTAKE
"""
).split('\n')
vars_plot = vars_plot[1:-1]



ymin = 9e20
ymax = -9e20
sum_ts = 0
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    sum_ts= sum_ts + ts_data
    ts_data.plot(figsize=(20,3))
    if np.min(ts_data.values) < ymin:
        ymin = np.min(ts_data.values)
    if np.max(ts_data.values) > ymax:
        ymax = np.max(ts_data.values)
    
    plt.title(f"{ds[key][var].long_name} ({var}) - {key} - AnnualSUM | Units: {ds[key][var].units}")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.axvline(x = 1996, color = 'g',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(.2e-6,1.5e-6)
    if i_var != len(vars_plot)-1 : 
        plt.xticks([])
        plt.xlabel(None)
        
fig = plt.figure(figsize=(20,9))
plt.title (f"Common Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    if var == "FATES_L2FR" : continue
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = var)
    plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
fig1 = plt.figure(figsize=(20,9))
plt.title (f"Fractional Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data/sum_ts, label = var)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
       
        

### *Figure Set 9*

print ("\nFigure Set 9 >>>>>>")

# For multiple variables on a same plot

#sims = "ORN_PIDA_RD_AgBgW" # Difined at the top
key=sims

vars_plot = (
"""
GROSS_NMIN
NET_NMIN
"""
).split('\n')
vars_plot = vars_plot[1:-1]



ymin = 9e20
ymax = -9e20
sum_ts = 0
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    sum_ts= sum_ts + ts_data
    ts_data.plot(figsize=(20,3))
    if np.min(ts_data.values) < ymin:
        ymin = np.min(ts_data.values)
    if np.max(ts_data.values) > ymax:
        ymax = np.max(ts_data.values)
    
    plt.title(f"{ds[key][var].long_name} ({var}) - {key} - AnnualSUM | Units: {ds[key][var].units}")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.axvline(x = 1996, color = 'g',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(.2e-6,1.5e-6)
    if i_var != len(vars_plot)-1 : 
        plt.xticks([])
        plt.xlabel(None)
        
fig = plt.figure(figsize=(20,9))
plt.title (f"Common Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    if var == "FATES_L2FR" : continue
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = var)
    plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
fig1 = plt.figure(figsize=(20,9))
plt.title (f"Fractional Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data/sum_ts, label = var)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
       
        

Figure Set 10

print ("\nFigure Set 10 >>>>>>")

# For multiple variables on a same plot

#sims = "ORN_PIDA_RD_AgBgW" # Difined at the top
key=sims

vars_plot = (
"""
SMIN_NO3_LEACHED
DENIT
"""
).split('\n')
vars_plot = vars_plot[1:-1]



ymin = 9e20
ymax = -9e20
sum_ts = 0
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    sum_ts= sum_ts + ts_data
    ts_data.plot(figsize=(20,3))
    if np.min(ts_data.values) < ymin:
        ymin = np.min(ts_data.values)
    if np.max(ts_data.values) > ymax:
        ymax = np.max(ts_data.values)
    
    plt.title(f"{ds[key][var].long_name} ({var}) - {key} - AnnualSUM | Units: {ds[key][var].units}")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.axvline(x = 1996, color = 'g',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(.2e-6,1.5e-6)
    if i_var != len(vars_plot)-1 : 
        plt.xticks([])
        plt.xlabel(None)
        
fig = plt.figure(figsize=(20,9))
plt.title (f"Common Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    if var == "FATES_L2FR" : continue
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = var)
    plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
fig1 = plt.figure(figsize=(20,9))
plt.title (f"Fractional Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data/sum_ts, label = var)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
       
        

# For multiple variables on a same plot

#sims = "ORN_PIDA_RD_AgBgW" # Difined at the top
key=sims

vars_plot = (
"""
FATES_FROOTC
FATES_LEAFC
FATES_NONSTRUCTC
FATES_REPROC
FATES_SAPWOODC
FATES_STOREC
FATES_STRUCTC
FATES_VEGC
"""
).split('\n')
vars_plot = vars_plot[1:-1]



ymin = 9e20
ymax = -9e20
sum_ts = 0
for i_var,var in enumerate(vars_plot):
    print(var)
    ts_data = ds[key][var].groupby("time.year").mean('time')
    sum_ts= sum_ts + ts_data
    ts_data.plot(figsize=(20,3))
    if np.min(ts_data.values) < ymin:
        ymin = np.min(ts_data.values)
    if np.max(ts_data.values) > ymax:
        ymax = np.max(ts_data.values)
    
    plt.title(f"{ds[key][var].long_name} ({var}) - {key} - AnnualSUM | Units: {ds[key][var].units}")
    plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    #plt.axvline(x = 1996, color = 'g',lw=5, label = 'logging year', alpha=.2)
    #plt.ylim(.2e-6,1.5e-6)
    if i_var != len(vars_plot)-1 : 
        plt.xticks([])
        plt.xlabel(None)
        
fig = plt.figure(figsize=(20,9))
plt.title (f"Common Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data, label = var)
    plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
fig1 = plt.figure(figsize=(20,9))
plt.title (f"Fractional Plot for simulation {key}", fontsize=15)
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    plt.plot(ts_data.year, ts_data/sum_ts, label = var)
    #plt.ylim(ymin*.95,ymax*1.05)
    plt.legend(fontsize=14)
plt.axvline(x = logging_year, color = 'r',lw=5, label = 'logging year', alpha=.2)
    
        

FATES_NPP (for C-only at that site and RD/ECA) [done] FATES_NPP [done] FATES_STOREC FATES_STOREC_TF FATES_STOREN FATES_STOREN_TF FATES_STOREC_TF / FATES_STOREN_TF FATES_L2FR FATES_FROOTC_ALLOC / FATES_LEAFC_ALLOC FATES_FROOTC / FATES_LEAFC FATES_FROOTC FATES_LEAFC FATES_NO3UPTAKE FATES_NH4UPTAKE NET_NMIN GROSS_NMIN It's also be good to look at N leaching (NLEACH?) and denitrification (DENIT?). Not sure those are the variable names but the variables (however named) should be in the output files I hope. And let's take a look at PID-D for both Duke and ORNL, and PID-B for Duke.

Subplot 1: FATES_NPP (for C-only at that site and RD/ECA) 
Subplot 1: FATES_NPP
Subplot 2: FATES_STOREC
Subplot 2: FATES_STOREC_TF
Subplot 3: FATES_STOREN
Subplot 3: FATES_STOREN_TF
Subplot 4: FATES_STOREC_TF / FATES_STOREN_TF
Subplot 5: FATES_FROOTC_ALLOC / FATES_LEAFC_ALLOC
Subplot 5: FATES_L2FR
Subplot 6: FATES_FROOTC / FATES_LEAFC
Subplot 6: FATES_FROOTC
Subplot 6: FATES_LEAFC
Subplot 7: FATES_NO3UPTAKE
Subplot 7: FATES_NH4UPTAKE 
Subplot 8: NET_NMIN
Subplot 8: GROSS_NMIN
Subplot 9: SMIN_NO3_LEACHED
Subplot 9: DENIT

print ("\nAll Plots >>>>>>")
# For multiple variables on a same plot
fig, axs = plt.subplots(9,1 , figsize=(15,30), dpi=400)

# Subplot 1 >>>
idx_ax = 0
var = "FATES_NPP"
# C-only
sim_conly = f"{sims.split('_')[0]}_PIDA_Conly_{sims.split('_')[-1]}"
key=sim_conly
ts_data = ds[key][var].groupby("time.year").mean('time')
axs[idx_ax].plot(ts_data.year, ts_data, label = var + " C-only")
# RD
key=sims
ts_data = ds[key][var].groupby("time.year").mean('time')
axs[idx_ax].plot(ts_data.year, ts_data, label = var )
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
axs[idx_ax].set_title(f"{key}\n",fontsize=16)

# Subplot 1 <<<

# Subplot 2 >>>
idx_ax = 1
vars_plot = (
"""
FATES_STOREC_TF
FATES_STOREC
"""
).split('\n')
vars_plot = vars_plot[1:-1]
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    axs[idx_ax].plot(ts_data.year, ts_data, label = var)
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
# Subplot 2 <<<

# Subplot 3 >>>
idx_ax = 2
vars_plot = (
"""
FATES_STOREN_TF
FATES_STOREN
"""
).split('\n')
vars_plot = vars_plot[1:-1]
var = vars_plot[0]
ts_data = ds[key][var].groupby("time.year").mean('time')
axs[idx_ax].plot(ts_data.year, ts_data, label = var)
ax_tmp = axs[idx_ax].twinx()
var = vars_plot[1]
ts_data = ds[key][var].groupby("time.year").mean('time')
ax_tmp.plot(ts_data.year,ts_data,'k+',  label = var)
ax_tmp.legend(loc = 5)
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
# Subplot 3 <<<

# Subplot 4 >>>
idx_ax = 3
ts_data = (ds[key]["FATES_STOREC_TF"]/ds[key]["FATES_STOREN_TF"]).groupby("time.year").mean('time')
axs[idx_ax].plot(ts_data.year, ts_data, label = "FATES_STOREC_TF/FATES_STOREN_TF")
ax_tmp = axs[idx_ax].twinx()
ts_data = (ds[key]["FATES_STOREC"]/ds[key]["FATES_STOREN"]).groupby("time.year").mean('time')
ax_tmp.plot(ts_data.year, ts_data, 'k+', label = "FATES_STOREC/FATES_STOREN")
ax_tmp.legend(loc = 5)
# Subplot 4 <<<

# Subplot 5 >>>
idx_ax = 4
ts_data = (ds[key]["FATES_FROOT_ALLOC"]/ds[key]["FATES_LEAF_ALLOC"]).groupby("time.year").mean('time')
axs[idx_ax].plot(ts_data.year, ts_data, label = "FATES_FROOT_ALLOC/FATES_LEAF_ALLOC")
ts_data = ds[key]["FATES_L2FR"].groupby("time.year").mean('time')
axs[idx_ax].plot(ts_data.year, ts_data, label = "FATES_L2FR")
# Subplot 5 <<<

# Subplot 6 >>>
idx_ax = 5
vars_plot = (
"""
FATES_LEAFC
FATES_FROOTC
"""
).split('\n')
vars_plot = vars_plot[1:-1]
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    axs[idx_ax].plot(ts_data.year, ts_data, label = var)
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
ax_tmp = axs[idx_ax].twinx()
ts_data = (ds[key]["FATES_FROOTC"]/ds[key]["FATES_LEAFC"]).groupby("time.year").mean('time')
ax_tmp.plot(ts_data.year, ts_data, 'k+', label = "FATES_FROOTC/FATES_LEAFC")
ax_tmp.legend(loc = 1)

# Subplot 6 <<<

# Subplot 7 >>>
idx_ax = 6
vars_plot = (
"""
FATES_NO3UPTAKE
FATES_NH4UPTAKE
"""
).split('\n')
vars_plot = vars_plot[1:-1]
var = vars_plot[0]
ts_data = ds[key][var].groupby("time.year").mean('time')
axs[idx_ax].plot(ts_data.year, ts_data, label = var)
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
ax_tmp = axs[idx_ax].twinx()
var = vars_plot[1]
ts_data = ds[key][var].groupby("time.year").mean('time')
ax_tmp.plot(ts_data.year,ts_data,'k+',  label = var)
ax_tmp.legend(loc = 5)
# Subplot 7 <<<

# Subplot 8 >>>
idx_ax = 7
vars_plot = (
"""
GROSS_NMIN
NET_NMIN
"""
).split('\n')
vars_plot = vars_plot[1:-1]
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    axs[idx_ax].plot(ts_data.year, ts_data, label = var)
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
# Subplot 8 <<<

# Subplot 9 >>>
idx_ax = 8
vars_plot = (
"""
SMIN_NO3_LEACHED
DENIT
"""
).split('\n')
vars_plot = vars_plot[1:-1]
for i_var,var in enumerate(vars_plot):
    ts_data = ds[key][var].groupby("time.year").mean('time')
    axs[idx_ax].plot(ts_data.year, ts_data, label = var)
axs[idx_ax].set_ylabel (f"{ds[key][var].units}")
# Subplot 9 <<<


for i in range(len(axs)): 
    axs[i].legend()
    axs[i].axvline(x = logging_year, color = 'r',lw=5, alpha=.2)
    
fig.savefig('./Plots/' + f'{key}.pdf',bbox_inches='tight')
fig.savefig('./Plots/' + f'{key}.png',bbox_inches='tight')

pwd

print ("Successful run")

Ignore the plots after this cell!